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Articles (34)
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Parallel selection on thermal physiology facilitates repeated adaptation of city lizards to urban heat islands

Campbell-Staton, Shane C., Winchell, Kristin M., Rochette, Nicolas C., Fredette, Jason, Maayan, Inbar, Schweizer, Rena M., Catchen, Julian

Journal:

Nature Ecology & Evolution

Année:

2020

Fichier:

PDF, 4.92 MB

2020

Genome-wide genetic marker discovery and genotyping using next-generation sequencing

Davey, John W., Hohenlohe, Paul A., Etter, Paul D., Boone, Jason Q., Catchen, Julian M., Blaxter, Mark L.

Journal:

Nature Reviews Genetics

Année:

2011

Langue:

english

Fichier:

PDF, 831 KB

english, 2011

Ancient three-spined stickleback (Gasterosteus aculeatus) mtDNA lineages are not associated with phenotypic or nuclear genetic variation

Lescak, Emily A, Wund, Matthew A, Bassham, Susan, Catchen, Julian, Prince, Daniel J, Lucas, Ryan, Dominguez, Gabrielle, von Hippel, Frank A, Cresko, William A

Journal:

Biological Journal of the Linnean Society

Année:

2017

Langue:

english

Fichier:

PDF, 487 KB

english, 2017

Evolution of developmental regulation in the vertebrate FgfD subfamily

Richard Jovelin, Yi-Lin Yan, Xinjun He, Julian Catchen, Angel Amores, Cristian Canestro, Hayato Yokoi, John H. Postlethwait

Journal:

Journal of Experimental Zoology Part B: Molecular and Developmental Evolution

Année:

2010

Langue:

english

Fichier:

PDF, 739 KB

english, 2010

Rule-based workflow management for bioinformatics

John S. Conery, Julian M. Catchen, Michael Lynch

Journal:

The VLDB Journal

Année:

2005

Langue:

english

Fichier:

PDF, 418 KB

english, 2005

Identification of transcriptome SNPs between Xiphophorus lines and species for assessing allele specific gene expression within F1 interspecies hybrids

Yingjia Shen, Julian Catchen, Tzintzuni Garcia, Angel Amores, Ion Beldorth, Jonathan Wagner, Ziping Zhang, John Postlethwait, Wes Warren, Manfred Schartl, Ronald B. Walter

Journal:

Comparative Biochemistry and Physiology Part C: Toxicology & Pharmacology

Année:

2012

Langue:

english

Fichier:

PDF, 395 KB

english, 2012

Expression profiling of zebrafish sox9 mutants reveals that Sox9 is required for retinal differentiation

Hayato Yokoi, Yi-Lin Yan, Michael R. Miller, Ruth A. BreMiller, Julian M. Catchen, Eric A. Johnson, John H. Postlethwait

Journal:

Developmental Biology

Année:

2009

Langue:

english

Fichier:

PDF, 910 KB

english, 2009

UDP xylose synthase 1 is required for morphogenesis and histogenesis of the craniofacial skeleton

B. Frank Eames, Amy Singer, Gabriel A. Smith, Zachary A. Wood, Yi-Lin Yan, Xinjun He, Samuel J. Polizzi, Julian M. Catchen, Adriana Rodriguez-Mari, Tor Linbo, David W. Raible, John H. Postlethwait

Journal:

Developmental Biology

Année:

2010

Langue:

english

Fichier:

PDF, 3.46 MB

english, 2010

Next-generation RAD sequencing identifies thousands of SNPs for assessing hybridization between rainbow and westslope cutthroat trout

PAUL A. HOHENLOHE, STEPHEN J. AMISH, JULIAN M. CATCHEN, FRED W. ALLENDORF, GORDON LUIKART

Journal:

Molecular Ecology Resources

Année:

2011

Langue:

english

Fichier:

PDF, 318 KB

english, 2011

Stacks: an analysis tool set for population genomics

Catchen, Julian, Hohenlohe, Paul A., Bassham, Susan, Amores, Angel, Cresko, William A.

Journal:

Molecular Ecology

Année:

2013

Langue:

english

Fichier:

PDF, 1.02 MB

english, 2013

The population structure and recent colonization history of Oregon threespine stickleback determined using restriction-site associated DNA-sequencing

Catchen, Julian, Bassham, Susan, Wilson, Taylor, Currey, Mark, O'Brien, Conor, Yeates, Quick, Cresko, William A.

Journal:

Molecular Ecology

Année:

2013

Langue:

english

Fichier:

PDF, 1.98 MB

english, 2013

[Methods in Cell Biology] The Zebrafish: Genetics, Genomics and Informatics Volume 104 || Conserved Synteny and the Zebrafish Genome

Catchen, Julian M.

Année:

2011

Langue:

english

Fichier:

PDF, 568 KB

english, 2011

The genome of the platyfish, Xiphophorus maculatus, provides insights into evolutionary adaptation and several complex traits

Schartl, Manfred, Walter, Ronald B, Shen, Yingjia, Garcia, Tzintzuni, Catchen, Julian, Amores, Angel, Braasch, Ingo, Chalopin, Domitille, Volff, Jean-Nicolas, Lesch, Klaus-Peter, Bisazza, Angelo, Minx

Journal:

Nature Genetics

Année:

2013

Langue:

english

Fichier:

PDF, 1.03 MB

english, 2013

Evolution of a New Function by Degenerative Mutation in Cephalochordate Steroid Receptors

Bridgham, Jamie T., Brown, Justine E., Rodríguez-Marí, Adriana, Catchen, Julian M., Thornton, Joseph W., Malik, Harmit S.

Journal:

PLoS Genetics

Année:

2008

Langue:

english

Fichier:

PDF, 619 KB

english, 2008

Comparative Oncogenomic Analysis of Copy Number Alterations in Human and Zebrafish Tumors Enables Cancer Driver Discovery

Zhang, GuangJun, Hoersch, Sebastian, Amsterdam, Adam, Whittaker, Charles A., Beert, Eline, Catchen, Julian M., Farrington, Sarah, Postlethwait, John H., Legius, Eric, Hopkins, Nancy, Lees, Jacqueline

Journal:

PLoS Genetics

Année:

2013

Langue:

english

Fichier:

PDF, 1.03 MB

english, 2013

Evolution of stickleback in 50 years on earthquake-uplifted islands

Lescak, Emily A., Bassham, Susan L., Catchen, Julian, Gelmond, Ofer, Sherbick, Mary L., von Hippel, Frank A., Cresko, William A.

Journal:

Proceedings of the National Academy of Sciences

Année:

2015

Langue:

english

Fichier:

PDF, 1.18 MB

english, 2015

The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons

Braasch, Ingo, Gehrke, Andrew R, Smith, Jeramiah J, Kawasaki, Kazuhiko, Manousaki, Tereza, Pasquier, Jeremy, Amores, Angel, Desvignes, Thomas, Batzel, Peter, Catchen, Julian, Berlin, Aaron M, Campbell

Journal:

Nature Genetics

Année:

2016

Langue:

english

Fichier:

PDF, 3.00 MB

english, 2016

Corrigendum: The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons

Journal:

Nature Genetics

Année:

2016

Langue:

english

Fichier:

PDF, 121 KB

english, 2016

Resolving postglacial phylogeography using high-throughput sequencing

Kevin J. Emerson, Clayton R. Merz, Julian M. Catchen, Paul A. Hohenlohe, William A. Cresko, William E. Bradshaw and Christina M. Holzapfel

Journal:

Proceedings of the National Academy of Sciences

Année:

2010

Langue:

english

Fichier:

PDF, 1.48 MB

english, 2010

Footprints in time: comparative quantitative trait loci mapping of the pitcher-plant mosquito, Wyeomyia smithii

William E. Bradshaw, Kevin J. Emerson, Julian M. Catchen, William A. Cresko and Christina M. Holzapfel

Journal:

Proceedings Biological Sciences

Année:

2012

Langue:

english

Fichier:

PDF, 1.60 MB

english, 2012

RADcap: Sequence Capture of Dual-digest RADseq Libraries with Identifiable Duplicates and Reduced Missing Data

Hoffberg, Sandra L., Kieran, Troy J., Catchen, Julian M., Devault, Alison, Faircloth, Brant C., Mauricio, Rodney, Glenn, Travis C.

Journal:

Molecular Ecology Resources

Année:

2016

Langue:

english

Fichier:

PDF, 362 KB

english, 2016

Unbroken: RADseq remains a powerful tool for understanding the genetics of adaptation in natural populations

Catchen, Julian M., Hohenlohe, Paul A., Bernatchez, Louis, Funk, W. Chris, Andrews, Kimberly R., Allendorf, Fred W.

Journal:

Molecular Ecology Resources

Année:

2017

Langue:

english

Fichier:

PDF, 107 KB

english, 2017

Lost in parameter space: a road map for stacks

Paris, Josephine R., Stevens, Jamie R., Catchen, Julian M., Johnston, Susan

Journal:

Methods in Ecology and Evolution

Année:

2017

Langue:

english

Fichier:

PDF, 1.36 MB

english, 2017

Winter storms drive rapid phenotypic, regulatory, and genomic shifts in the green anole lizard

Campbell-Staton, Shane C., Cheviron, Zachary A., Rochette, Nicholas, Catchen, Julian, Losos, Jonathan B., Edwards, Scott V.

Journal:

Science

Année:

2017

Langue:

english

Fichier:

PDF, 456 KB

english, 2017

When structure leads to sex: Untangling signals in population genetic data sets

Catchen, Julian

Journal:

Molecular Ecology

Année:

2017

Langue:

english

Fichier:

PDF, 434 KB

english, 2017

The Novel Evolution of the Sperm Whale Genome

Warren, Wesley C, Kuderna, Lukas, Alexander, Alana, Catchen, Julian, Pérez-Silva, José G, López-Otín, Carlos, Quesada, Víctor, Minx, Patrick, Tomlinson, Chad, Montague, Michael J, Farias, Fabiana H G,

Journal:

Genome Biology and Evolution

Année:

2017

Langue:

english

Fichier:

PDF, 326 KB

english, 2017

Repeated Selection of Alternatively Adapted Haplotypes Creates Sweeping Genomic Remodeling in Stickleback

Bassham, Susan, Catchen, Julian, Lescak, Emily, von Hippel, Frank A., Cresko, William A.

Journal:

Genetics

Année:

2018

Langue:

english

Fichier:

PDF, 6.75 MB

english, 2018

Replicate Phylogenies and Post-Glacial Range Expansion of the Pitcher-Plant Mosquito, Wyeomyia smithii, in North America

Merz, Clayton, Catchen, Julian M., Hanson-Smith, Victor, Emerson, Kevin J., Bradshaw, William E., Holzapfel, Christina M., Etges, William J.

Journal:

PLoS ONE

Année:

2013

Langue:

english

Fichier:

PDF, 633 KB

english, 2013

Hybridization and postzygotic isolation promote reinforcement of male mating preferences in a diverse group of fishes with traditional sex roles

Moran, Rachel L., Zhou, Muchu, Catchen, Julian M., Fuller, Rebecca C.

Journal:

Ecology and Evolution

Année:

2018

Langue:

english

Fichier:

PDF, 760 KB

english, 2018

Selection, Linkage, and Population Structure Interact To Shape Genetic Variation Among Threespine Stickleback Genomes

Nelson, Thomas C., Crandall, Johnathan G., Ituarte, Catherine M., Catchen, Julian M., Cresko, William A.

Journal:

Genetics

Année:

2019

Langue:

english

Fichier:

PDF, 1.51 MB

english, 2019

Stacks 2: Analytical methods for paired‐end sequencing improve RADseq‐based population genomics

Rochette, Nicolas C., Rivera‐Colón, Angel G., Catchen, Julian M.

Journal:

Molecular Ecology

Année:

2019

Langue:

english

Fichier:

PDF, 2.44 MB

english, 2019

Stacks 2: Analytical methods for paired‐end sequencing improve RADseq‐based population genomics

Rochette, Nicolas C., Rivera‐Colón, Angel G., Catchen, Julian M.

Journal:

Molecular Ecology

Année:

2019

Fichier:

PDF, 2.44 MB

2019

Simulation with RADinitio improves RADseq experimental design and sheds light on sources of missing data

Rivera-ColÃ³n, Angel G., Rochette, Nicolas C., Catchen, Julian M.

Journal:

Molecular Ecology Resources

Année:

2020

Fichier:

PDF, 1.57 MB

2020

Chromonomer: A Tool Set for Repairing and Enhancing Assembled Genomes Through Integration of Genetic Maps and Conserved Synteny

Catchen, Julian, Amores, Angel, Bassham, Susan

Journal:

G3 Genes|Genome|Genetics

Année:

2020

Fichier:

PDF, 9.14 MB

2020